External Links

---

• National Center for Biotechnology Information (NCBI)

  The National Center for Biotechnology Information (NCBI) serves as an important bioinformatics resource, advancing scientific and health globally. It provides critical access to extensive biomedical and genomic information.

• Rice Genome Annotation Project (RGAP)

  The Rice Genome Annotation Project Database (RGAP) is one of the major primary databases for the japonica cultivar of rice. It offers the genome sequence of the Nipponbare rice subspecies, along with a comprehensive set of annotations for all 12 of its chromosomes.

• The Rice Annotation Project (RAP)

  The Rice Annotation Project (RAP) offers the scientific community an accurate and timely annotation of the Oryza sativa japonica cv. Nipponbare genome sequence. Its database, RAP-DB, presents a detailed assembly of the International Rice Genome Sequencing Project (IRGSP) genome sequence, enriched with manually curated annotations and other genomics information.

• Molecular Breeding Knowledgebase (MBKbase)

  The Molecular Breeding Knowledgebase (MBKbase) is a rich resource that serves as an integrated platform for a variety of genomics data, including population next-generation sequencing, germplasm resources, phenotypic data, and other genomics information. It also offers sophisticated online tools for the screening of germplasm, the comparison of individuals, and the analysis of variations.

• Plant Public RNA-seq Database (PPRD)

  The Plant Public RNA-seq Database (PPRD) is a free, web-accessible platform that offers a user-friendly interface for exploring gene expression across 44,000+ plant RNA-Seq libraries. It facilitates the search, filtering, visualization, browsing and downloading of the RNA-seq data.

• RPAN: Rice Pan-genome Browser

  RPAN, the Rice Pan-genome Browser, is a powerful tool designed for searching and visualizing the rice pan-genome. With a comprehensive database encompassing 3010 rice accessions, RPAN offers insights into genomic sequences, gene annotations, PAV data, and gene expression profiles.

• Plant Transcriptional Regulatory Map

  Plant Transcriptional Regulatory Map furnishes a high-quality resource of plant transcription factors (TFs), regulatory elements and interactions between them, enhancing the comprehension of plant transcriptional regulatory system.